Each planet in Mario + Rabbids Sparks of Hope contains hidden 'Secret Zones' and environmental puzzles that are not directly tied to the main story or Spark Quests. These often require keen observation, backtracking with new abilities, or solving intricate logic puzzles. Secret Zones might be hidden behind destructible walls, accessible only after acquiring a specific Spark ability, or found by interacting with seemingly innocuous objects. The puzzles can range from simple block-pushing to complex light-reflection or musical sequence challenges. Rewards for uncovering these secrets typically include valuable items like Planet Coins, Star Bits, Spark Powders, or even unique weapon skins. Exploring every nook and cranny of a planet is highly recommended to discover these hidden gems and reap their rewards, which can significantly boost your progression.

While Sparks of Hope features intricate environmental puzzles, Mario Kart DS introduced a similar layer of strategic depth through its unique Mission Mode challenges.
The gravity-defying platforming and spherical geometry found in these Secret Zones mirror the imaginative level design that first defined the cosmic exploration of Super Mario Galaxy.